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Abstract
<jats:p>River–lake confluence zones are shaped by inflow hydrology, evaporative concentration, and water mixing, providing natural systems for examining phytoplankton responses to environmental gradients. Here, we investigated Siling Co and adjacent river–lake confluence zones at elevations above 4,500 m. We integrated genus-level phytoplankton cell-density and biomass data with 22 environmental variables from 14 sampling events at 10 sites, including seven Lake and seven River samples. Community diversity, composition, and community–environment associations were evaluated using ordination, permutation tests, correlation analyses, distance-based redundancy analysis, Mantel tests, and multi-method evidence integration. In total, 54 genera were recorded, with Bacillariophyta representing the dominant phylum. Lake and River samples overlapped in community composition, whereas sampling period explained more genus-level variation than water-body type. Major-ion and mineralization gradients were consistently associated with community turnover. pH and SiO₂ were associated with cell-density composition, whereas Cl⁻ was associated with biomass composition. Cyanobacterial relative biomass was positively correlated with total nitrogen and negatively correlated with SO₄²⁻. These findings indicate that phytoplankton community structure in the Siling Co river–lake confluence zone cannot be attributed simply to two discrete habitat types, namely lakes and rivers, and provide a new perspective on community assembly in extremely high-altitude river–lake confluence zones.</jats:p>